# Instructions for Each Functional Module

* Detailed introduction to 14 functional modules, including purpose, usage, input parameter description, output result explanation, parameter tuning suggestions, and performance testing.
* The order of the 14 functional modules is: Data Processing, Cell Type Annotation, Spatial Domain Identification, Cellular Neighborhood Analysis, CNV Analysis, Spatial Gene Co-expression, Differential Gene Analysis, Gene Set Enrichment Analysis,Protein Interaction Network Analysis, Cell Communication Analysis, Trajectory Analysis, Transcription Factor Analysis, Cell-type Spatial Relationship Analysis, and Public Bulk Database Validation.

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