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Input File Example

Gene List File

  • --input Custom gene list file, no header, one gene name per line (cannot be gene id)

CA8

NDRG1

DEFB1

CYP2W1

NAPRT

STRING Database Files (Optional)

  • Optional: If it's human or mouse, just input the species parameter directly

  • links_db: Protein interaction relationship file (e.g.: 9606.protein.links.v12.0.txt)

  • aliases_db: Protein alias file (e.g.: 9606.protein.aliases.v12.0.txt)

STRING Database Documentation

  • Built-in database sources:

    • Download: https://cn.string-db.org/cgi/download?sessionId=bq3ONpHVnJ16V12.0

  • ​Custom database construction:

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