SDAS Manual
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SDAS Manual
  • Stereo Data Analysis Solution (SDAS) User Manual
    • Software Introduction
    • Installation Guide
    • Quick Start
    • Instructions for Each Functional Module
      • SDAS Input Data Format Description
      • Performance Test Environment and Data Description
      • Data Processing
      • Cell Type Annotation
        • Introduction
        • h5ad Data Format Description
        • cell2location Algorithm
        • RCTD Algorithm
        • Tangram Algorithm
        • SCimilarity Algorithm
        • SPOTlight Algorithm
        • Performance Test
      • Spatial Domain Identification
      • Cellular Neighborhood Analysis
      • CNV Analysis
      • Spatial Gene Co-expression
      • Differential Gene Analysis
      • Gene Set Enrichment Analysis
      • Protein Interaction Network Analysis
      • Cell Communication Analysis
      • Trajectory Analysis
      • Transcription Factor Analysis
      • Cell-type Spatial Relationship Analysis
      • Public Bulk Database Validation
    • Pipeline Example
    • Release Notes
    • Support
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  1. Stereo Data Analysis Solution (SDAS) User Manualchevron-right
  2. Instructions for Each Functional Module

Cell Type Annotation

Introductionchevron-righth5ad Data Format Descriptionchevron-rightcell2location Algorithmchevron-rightRCTD Algorithmchevron-rightTangram Algorithmchevron-rightSCimilarity Algorithmchevron-rightSPOTlight Algorithmchevron-rightPerformance Testchevron-right
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Last updated 6 months ago