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Performance Test

Runtime and Memory Usage

  • GSEA and GSVA were tested using data with different numbers of bins, and runtime and memory usage were recorded. The test results show that when the number of bins/cells exceeds 200k, GSEA cannot run normally, and GSVA requires a large amount of computing resources. In this case, you can reduce the data volume by random sampling of bin/cell data (set the downsampling parameter --sample_size 200000) before analysis.

Runtime and Memory:

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