简介

CCI（Cell-Cell Interaction）模块用于空间转录组和单细胞数据的细胞通讯分析，支持cellchat和cellphonedb两种算法，输出多种交互强度、通路、网络等结果。

参考文献

• Jin, S., Plikus, M. V., & Nie, Q. (2025). CellChat for systematic analysis of cell–cell communication from single-cell transcriptomics. Nature protocols, 20(1), 180-219.

• Troulé, K., Petryszak, R., Cakir, B., Cranley, J., Harasty, A., Prete, M., ... & Vento-Tormo, R. (2025). CellPhoneDB v5: inferring cell–cell communication from single-cell multiomics data. Nature Protocols, 1-29.